Variant report

Variant	rs11772970
Chromosome Location	chr7:80339214-80339215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11762052	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11971792	0.82[EUR][1000 genomes]
rs11982937	0.82[EUR][1000 genomes]
rs11983007	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11983746	0.80[EUR][1000 genomes]
rs12055973	0.86[EUR][1000 genomes]
rs12056187	0.86[EUR][1000 genomes]
rs16886849	0.80[EUR][1000 genomes]
rs17154337	0.80[EUR][1000 genomes]
rs1880957	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80333000-80340600	Weak transcription	Osteobl	bone
2	chr7:80336200-80339800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:80336800-80340800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:80337200-80340400	Weak transcription	NHDF-Ad	bronchial
5	chr7:80337200-80340800	Weak transcription	NHLF	lung
6	chr7:80337200-80341200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:80337600-80339800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:80338400-80340200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:80338600-80339800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr7:80338600-80339800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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