Variant report

Variant	rs11971792
Chromosome Location	chr7:80341163-80341164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11762052	0.92[EUR][1000 genomes]
rs11765496	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11772970	0.82[EUR][1000 genomes]
rs11982937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983007	0.92[EUR][1000 genomes]
rs11983746	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12055973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12056187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1334522	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1527464	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1527465	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16886849	0.88[EUR][1000 genomes]
rs17154337	0.88[EUR][1000 genomes]
rs17154380	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs1830224	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880957	0.84[EUR][1000 genomes]
rs1880958	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3778673	0.90[CEU][hapmap]
rs3778674	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs6974236	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73386847	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954409	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954410	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11971792	CD36	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80337200-80341200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80340400-80341400	Enhancers	NHDF-Ad	bronchial
3	chr7:80340600-80341400	Enhancers	Osteobl	bone
4	chr7:80340800-80341200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:80340800-80341200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:80340800-80341200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr7:80340800-80341400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:80340800-80341400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:80340800-80341400	Enhancers	NHLF	lung
10	chr7:80341000-80341200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:80341000-80341200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:80341000-80341200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:80341000-80341400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:80341000-80341400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:80341000-80341400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:80341000-80342400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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