Variant report

Variant	rs11770570
Chromosome Location	chr7:103970510-103970511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11770080	1.00[MEX][hapmap]
rs11773538	0.90[CEU][hapmap]
rs11773713	1.00[MEX][hapmap]
rs17137052	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs17137079	1.00[CEU][hapmap]
rs17331161	0.88[CEU][hapmap]
rs6966494	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11770570	CBLL1	cis	parietal	SCAN
rs11770570	FBXO24	cis	parietal	SCAN
rs11770570	C7orf51	cis	parietal	SCAN
rs11770570	FLJ44054	trans	lymphoblastoid	seeQTL
rs11770570	SERPINE1	cis	parietal	SCAN
rs11770570	ZNHIT1	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103968400-103970600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr7:103968400-103971000	Active TSS	Brain Anterior Caudate	brain
3	chr7:103968600-103970600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr7:103968600-103970600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:103968800-103970600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr7:103968800-103972400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:103969000-103970800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:103969600-103970600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
9	chr7:103969600-103971600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr7:103970200-103970600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr7:103970200-103970600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
12	chr7:103970200-103970600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:103970200-103970600	Bivalent Enhancer	Brain Angular Gyrus	brain
14	chr7:103970200-103970600	Active TSS	Brain Hippocampus Middle	brain
15	chr7:103970200-103971000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:103970200-103971400	Bivalent/Poised TSS	Fetal Brain Female	brain
17	chr7:103970400-103970600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr7:103970400-103970600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:103970400-103970600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr7:103970400-103970600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr7:103970400-103970600	Enhancers	Brain Substantia Nigra	brain
22	chr7:103970400-103970800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
23	chr7:103970400-103970800	Bivalent Enhancer	NHDF-Ad	bronchial
24	chr7:103970400-103971000	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr7:103970400-103971200	Bivalent/Poised TSS	Brain Germinal Matrix	brain

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