Variant report

Variant	rs11773538
Chromosome Location	chr7:104003663-104003664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11770570	0.90[CEU][hapmap]
rs17137052	0.90[CEU][hapmap];0.97[EUR][1000 genomes]
rs17137079	0.90[CEU][hapmap];0.88[YRI][hapmap];0.97[EUR][1000 genomes]
rs17331134	0.89[YRI][hapmap]
rs17331161	0.80[CEU][hapmap]
rs6966494	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104001600-104005200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:104002400-104005200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:104002600-104004200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:104002800-104005200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:104002800-104005400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:104003000-104005000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:104003000-104005000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:104003200-104004000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:104003200-104004600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:104003200-104004800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:104003200-104005200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:104003400-104004200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:104003600-104005200	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links