Variant report

Variant	rs17137052
Chromosome Location	chr7:104009435-104009436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11770080	1.00[MEX][hapmap]
rs11770570	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs11773538	0.90[CEU][hapmap];0.97[EUR][1000 genomes]
rs11773713	1.00[MEX][hapmap]
rs12673163	0.94[AFR][1000 genomes]
rs17137079	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17331134	0.86[ASW][hapmap];1.00[LWK][hapmap]
rs17331161	0.88[CEU][hapmap]
rs6966494	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104004200-104010600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:104004800-104016600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:104005000-104010000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:104006000-104009800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:104008600-104012200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:104009200-104010600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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