Variant report

Variant	rs17331134
Chromosome Location	chr7:103996931-103996932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10487202	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11773538	0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs12673163	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17137052	0.86[ASW][hapmap];1.00[LWK][hapmap]
rs17390505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59156995	0.98[ASN][1000 genomes]
rs62486509	0.98[ASN][1000 genomes]
rs62486513	0.93[ASN][1000 genomes]
rs9641331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17331134	ZNHIT1	cis	cerebellum	SCAN
rs17331134	PVRIG	cis	cerebellum	SCAN
rs17331134	PILRB	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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