Variant report

Variant	rs11773909
Chromosome Location	chr8:39797458-39797459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10085935	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10113563	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10216901	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10504013	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10755980	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10958573	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10958574	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11773975	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11777082	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11779313	0.91[EUR][1000 genomes]
rs11779697	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11779700	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781217	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11786337	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11787388	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11787449	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11992749	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11994259	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2052377	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052379	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2111741	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2160860	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2340952	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2543042	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2543044	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2543046	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2543047	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2543049	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2543050	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2729456	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2729459	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2729460	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2729462	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2729476	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28841363	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35995308	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739319	0.96[CEU][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55698142	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55818481	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55992954	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56045817	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56838465	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59312250	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59445010	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62512638	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6474194	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6474195	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6474196	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6474197	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6983463	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6983940	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6984887	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7000868	0.96[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7003411	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7013824	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7824841	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7828760	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7832080	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7839881	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7839885	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7845003	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7845418	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:39793400-39798600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:39794400-39801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:39796600-39806200	Weak transcription	Small Intestine	intestine
5	chr8:39796800-39797600	Active TSS	Duodenum Mucosa	Duodenum
6	chr8:39796800-39797800	Enhancers	Pancreas	Pancrea
7	chr8:39797000-39797600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:39797000-39797600	Active TSS	Adipose Nuclei	Adipose
9	chr8:39797000-39797800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:39797000-39797800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr8:39797000-39798000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:39797000-39798200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr8:39797200-39797600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:39797200-39797600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:39797200-39797600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:39797200-39797600	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr8:39797200-39797600	Active TSS	Primary monocytes fromperipheralblood	blood
18	chr8:39797200-39797600	Active TSS	Primary B cells from peripheral blood	blood
19	chr8:39797200-39797600	Active TSS	Primary T cells fromperipheralblood	blood
20	chr8:39797200-39797600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr8:39797200-39797600	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr8:39797200-39797600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr8:39797200-39797600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr8:39797200-39797600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:39797200-39797600	Active TSS	Brain Substantia Nigra	brain
26	chr8:39797200-39797600	Active TSS	Colonic Mucosa	Colon
27	chr8:39797200-39797600	Active TSS	Fetal Kidney	kidney
28	chr8:39797200-39797600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr8:39797200-39797600	Active TSS	Fetal Lung	lung
30	chr8:39797200-39797600	Active TSS	Fetal Muscle Leg	muscle
31	chr8:39797200-39797600	Active TSS	Placenta	Placenta
32	chr8:39797200-39797600	Active TSS	Fetal Thymus	thymus
33	chr8:39797200-39797600	Active TSS	Rectal Smooth Muscle	rectum
34	chr8:39797200-39797600	Active TSS	Stomach Smooth Muscle	stomach
35	chr8:39797200-39797600	Active TSS	Thymus	Thymus
36	chr8:39797200-39797600	Active TSS	NHLF	lung
37	chr8:39797200-39797600	Active TSS	Osteobl	bone
38	chr8:39797200-39797800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr8:39797200-39797800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr8:39797200-39797800	Active TSS	Primary T cells from cord blood	blood
41	chr8:39797200-39797800	Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr8:39797200-39797800	Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr8:39797200-39797800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr8:39797200-39797800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr8:39797200-39797800	Active TSS	Liver	Liver
46	chr8:39797200-39797800	Active TSS	Brain Angular Gyrus	brain
47	chr8:39797200-39797800	Active TSS	Brain Anterior Caudate	brain
48	chr8:39797200-39797800	Active TSS	Brain Cingulate Gyrus	brain
49	chr8:39797200-39797800	Active TSS	Brain Hippocampus Middle	brain
50	chr8:39797200-39797800	Active TSS	Brain Inferior Temporal Lobe	brain

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