Variant report

Variant	rs6474197
Chromosome Location	chr8:39801128-39801129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10085935	0.80[ASN][1000 genomes]
rs10113563	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10216901	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10504013	0.82[EUR][1000 genomes]
rs10755980	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10958573	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10958574	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11773909	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11773975	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11777082	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11779697	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11779700	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11781217	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11786337	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11787388	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11787449	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11992749	0.82[EUR][1000 genomes]
rs11994259	0.82[EUR][1000 genomes]
rs28841363	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35995308	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55698142	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55818481	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55992954	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56045817	0.81[EUR][1000 genomes]
rs56838465	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59312250	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59445010	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6474194	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6474195	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6474196	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6983463	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6983940	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6984887	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7000868	0.80[EUR][1000 genomes]
rs7003411	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7013824	0.84[ASN][1000 genomes]
rs7824841	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7828760	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7832080	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7839881	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7839885	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7845003	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7845418	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:39794400-39801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:39796600-39806200	Weak transcription	Small Intestine	intestine
4	chr8:39797800-39802200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:39797800-39802400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:39797800-39802800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:39797800-39803000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:39797800-39805800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:39797800-39808400	Weak transcription	Fetal Lung	lung
10	chr8:39797800-39808800	Weak transcription	Left Ventricle	heart
11	chr8:39798000-39801400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:39798000-39805600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:39798200-39801200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr8:39798200-39801400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:39798200-39801600	Enhancers	A549	lung
16	chr8:39798200-39805600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:39798400-39801200	Weak transcription	K562	blood
18	chr8:39798600-39801200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr8:39798600-39801600	Enhancers	Hela-S3	cervix
20	chr8:39798800-39805400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:39799000-39801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:39799000-39801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:39800600-39801400	Weak transcription	HUVEC	blood vessel
24	chr8:39800600-39801600	Enhancers	Primary B cells from cord blood	blood
25	chr8:39800600-39801600	Enhancers	Primary B cells from peripheral blood	blood
26	chr8:39800600-39801800	Enhancers	Primary hematopoietic stem cells	blood
27	chr8:39800600-39803000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr8:39800800-39801200	Weak transcription	GM12878-XiMat	blood
29	chr8:39800800-39802600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links