Variant report

Variant	rs55698142
Chromosome Location	chr8:39796429-39796430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10085935	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113563	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216901	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504013	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10755980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10958573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10958574	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773909	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11773975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11777082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11779313	0.91[EUR][1000 genomes]
rs11779697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11779700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11781217	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11787388	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11787449	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992749	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11994259	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2052377	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2052379	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2111741	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2160860	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2340952	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2543042	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2543044	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2543046	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2543047	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2543049	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2543050	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2729456	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2729459	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2729460	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2729462	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2729476	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28841363	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3739319	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55818481	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55992954	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56045817	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56838465	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59312250	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59445010	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62512638	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6474194	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6474195	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474196	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6474197	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6983463	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6983940	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6984887	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7000868	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7003411	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013824	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7824841	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7828760	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7832080	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7839881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7839885	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7845003	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7845418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
2	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39792400-39797400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:39793400-39798600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:39794200-39796800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:39794400-39797200	Weak transcription	K562	blood
7	chr8:39794400-39797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:39794400-39797400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:39794400-39797400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:39794400-39801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:39795400-39796800	Weak transcription	Pancreas	Pancrea
12	chr8:39795400-39797200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:39795400-39797200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:39795400-39797200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:39796400-39796600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:39796400-39796600	Enhancers	Small Intestine	intestine
17	chr8:39796400-39797000	Enhancers	Primary B cells from peripheral blood	blood
18	chr8:39796400-39797000	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links