Variant report

Variant	rs11775133
Chromosome Location	chr8:49166245-49166246
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10957025	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11777512	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13258419	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13280326	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34664131	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35955912	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4493932	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873272	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7008284	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7464639	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv16816	chr8:49118221-49166985	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49157200-49171400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49165800-49166400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:49165800-49166400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr8:49165800-49167200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr8:49165800-49167800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:49165800-49168200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:49165800-49168600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:49166000-49166400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr8:49166000-49166400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr8:49166000-49166600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr8:49166000-49166600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:49166000-49166600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:49166200-49166600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:49166200-49173800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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