Variant report

Variant	rs34664131
Chromosome Location	chr8:49210371-49210372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10957003	0.83[ASN][1000 genomes]
rs10957025	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957026	0.81[ASN][1000 genomes]
rs11775133	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11777512	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11779663	0.84[ASN][1000 genomes]
rs11783152	0.83[ASN][1000 genomes]
rs11783466	0.84[ASN][1000 genomes]
rs12155524	0.82[ASN][1000 genomes]
rs12550843	0.83[ASN][1000 genomes]
rs12679335	0.83[ASN][1000 genomes]
rs13258419	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13280326	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35955912	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3935535	0.83[ASN][1000 genomes]
rs4077922	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4286973	0.83[ASN][1000 genomes]
rs4291295	0.83[ASN][1000 genomes]
rs4357320	0.82[ASN][1000 genomes]
rs4493932	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4873081	0.83[ASN][1000 genomes]
rs4873082	0.80[ASN][1000 genomes]
rs4873272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008284	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7464639	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7817899	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1018242	chr8:49190915-49243694	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539600	chr8:49190915-49243694	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49197000-49212200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49200800-49213800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49204000-49215200	Weak transcription	NHDF-Ad	bronchial
4	chr8:49204400-49210400	Weak transcription	NHLF	lung
5	chr8:49205800-49211600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:49209600-49210400	Enhancers	Fetal Lung	lung
7	chr8:49210000-49210400	Enhancers	Lung	lung
8	chr8:49210000-49211200	Enhancers	Right Atrium	heart
9	chr8:49210000-49211400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:49210000-49211400	Enhancers	Fetal Stomach	stomach
11	chr8:49210200-49210400	Enhancers	Duodenum Mucosa	Duodenum
12	chr8:49210200-49210800	Enhancers	Esophagus	oesophagus
13	chr8:49210200-49211000	Enhancers	Fetal Intestine Small	intestine
14	chr8:49210200-49211800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:49210200-49211800	Enhancers	Fetal Muscle Leg	muscle

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