Variant report

Variant	rs7464639
Chromosome Location	chr8:49168918-49168919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10957003	0.97[ASN][1000 genomes]
rs10957025	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11775133	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11777096	0.92[ASN][1000 genomes]
rs11777512	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779663	0.96[ASN][1000 genomes]
rs11783152	0.97[ASN][1000 genomes]
rs11783466	0.96[ASN][1000 genomes]
rs11786285	0.88[ASN][1000 genomes]
rs12155524	0.96[ASN][1000 genomes]
rs12550843	0.97[ASN][1000 genomes]
rs12679335	0.97[ASN][1000 genomes]
rs13258419	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13280326	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34664131	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35157243	0.84[ASN][1000 genomes]
rs35955912	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35975383	0.88[ASN][1000 genomes]
rs3935535	0.97[ASN][1000 genomes]
rs4077922	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4242486	0.88[ASN][1000 genomes]
rs4286973	0.97[ASN][1000 genomes]
rs4291295	0.97[ASN][1000 genomes]
rs4357320	0.96[ASN][1000 genomes]
rs4392930	0.91[ASN][1000 genomes]
rs4480143	0.88[ASN][1000 genomes]
rs4493932	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4873081	0.97[ASN][1000 genomes]
rs4873272	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7008284	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7817899	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7838270	0.88[ASN][1000 genomes]
rs9650185	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49157200-49171400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49166200-49173800	Weak transcription	Right Atrium	heart
3	chr8:49166800-49170600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:49166800-49171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49167800-49173000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:49168000-49173400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:49168000-49173400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:49168000-49173400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:49168000-49174000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:49168200-49173400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:49168600-49172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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