Variant report

Variant	rs11779663
Chromosome Location	chr8:49189319-49189320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10957003	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10957025	0.83[ASN][1000 genomes]
rs10958492	0.87[EUR][1000 genomes]
rs10958493	0.87[EUR][1000 genomes]
rs10958494	0.89[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs11777096	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11777512	0.86[ASN][1000 genomes]
rs11781426	0.87[EUR][1000 genomes]
rs11783152	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11783466	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786285	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12155524	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12550843	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679335	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12681895	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13258419	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs13280326	0.86[ASN][1000 genomes]
rs34664131	0.84[ASN][1000 genomes]
rs35157243	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35955912	0.97[ASN][1000 genomes]
rs35975383	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3935535	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4077922	0.90[ASN][1000 genomes]
rs4242486	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4286973	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4291295	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4357320	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4392930	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4480143	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4493932	0.84[ASN][1000 genomes]
rs4873081	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873272	0.86[ASN][1000 genomes]
rs4873788	0.89[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs7008284	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs7464639	0.96[ASN][1000 genomes]
rs7817899	0.89[ASN][1000 genomes]
rs7838270	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9650185	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1808901	chr8:49173411-49201882	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49183000-49201400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49186600-49192000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49186800-49192000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:49186800-49192000	Weak transcription	HMEC	breast
5	chr8:49186800-49192000	Weak transcription	NHEK	skin
6	chr8:49186800-49192200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:49186800-49199400	Weak transcription	Right Atrium	heart
8	chr8:49187000-49192000	Weak transcription	HUVEC	blood vessel
9	chr8:49187000-49192200	Weak transcription	Osteobl	bone
10	chr8:49187000-49192400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:49187200-49191000	Weak transcription	NHDF-Ad	bronchial
12	chr8:49187200-49191400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:49187200-49192000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:49187200-49192200	Weak transcription	NH-A	brain
15	chr8:49187200-49192400	Weak transcription	NHLF	lung
16	chr8:49187200-49198000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:49187800-49194400	Weak transcription	Fetal Stomach	stomach
18	chr8:49188000-49190800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:49188800-49192200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:49189200-49194400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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