Variant report

Variant	rs11781426
Chromosome Location	chr8:49109610-49109611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10086138	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10106082	0.84[ASN][1000 genomes]
rs10453133	0.83[AMR][1000 genomes]
rs10957003	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10958492	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958493	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778279	0.80[AFR][1000 genomes]
rs11779663	0.87[EUR][1000 genomes]
rs11783152	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11783466	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11783647	0.90[AFR][1000 genomes]
rs11783734	0.86[AFR][1000 genomes]
rs11786285	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12155524	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12155855	0.82[ASN][1000 genomes]
rs12550843	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12679335	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12681895	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12682398	0.82[ASN][1000 genomes]
rs13252104	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13265298	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34568428	0.81[AFR][1000 genomes]
rs35157243	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35975383	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3934733	0.83[ASN][1000 genomes]
rs3934735	0.83[ASN][1000 genomes]
rs3935535	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4072343	0.83[ASN][1000 genomes]
rs4242485	0.81[AFR][1000 genomes]
rs4242486	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4286973	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4291295	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4329299	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4357320	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4375031	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4392930	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4480143	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4526384	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4534147	1.00[ASW][hapmap];0.92[YRI][hapmap]
rs4873081	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873271	0.80[AFR][1000 genomes]
rs4873788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994417	0.81[AFR][1000 genomes]
rs7815183	1.00[ASW][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs7838270	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7844929	0.90[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.84[ASN][1000 genomes]
rs9650185	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9657169	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1841988	chr8:49093467-49156411	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49101800-49110400	Weak transcription	Ovary	ovary
2	chr8:49104200-49115400	Weak transcription	Adipose Nuclei	Adipose
3	chr8:49105200-49111000	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:49106600-49111000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:49107400-49110200	Weak transcription	NHDF-Ad	bronchial
6	chr8:49108000-49110000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links