Variant report

Variant	rs4873271
Chromosome Location	chr8:49169585-49169586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10099462	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1022140	0.88[ASN][1000 genomes]
rs10429272	0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808911	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10958494	0.89[YRI][hapmap]
rs11778279	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781426	0.80[AFR][1000 genomes]
rs11783647	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11783734	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12675189	0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34568428	0.80[AFR][1000 genomes]
rs4242485	0.80[AFR][1000 genomes]
rs4455863	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4455864	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4489344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4531079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4534147	0.88[YRI][hapmap]
rs4537328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596682	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4639551	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873788	0.89[YRI][hapmap]
rs6994417	0.80[AFR][1000 genomes]
rs7815183	0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs7838270	0.86[AFR][1000 genomes]
rs7841194	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49157200-49171400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49166200-49173800	Weak transcription	Right Atrium	heart
3	chr8:49166800-49170600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:49166800-49171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49167800-49173000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:49168000-49173400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:49168000-49173400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:49168000-49173400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:49168000-49174000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:49168200-49173400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:49168600-49172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:49169200-49170000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links