Variant report

Variant	rs11783734
Chromosome Location	chr8:49106648-49106649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKDC-2	chr8:49106410-49107187	NONHSAT126472

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10086138	0.80[AFR][1000 genomes]
rs10110043	0.83[AFR][1000 genomes]
rs10808911	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10958493	0.85[AFR][1000 genomes]
rs10958494	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs11778279	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11781426	0.86[AFR][1000 genomes]
rs11783647	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12544623	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13265298	0.80[AFR][1000 genomes]
rs28678847	0.83[AFR][1000 genomes]
rs34568428	0.89[AFR][1000 genomes]
rs35088698	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35578152	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3934732	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3934734	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4130803	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4242483	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4242484	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4242485	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4263791	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4373544	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4380968	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4397430	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4455864	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4475511	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4489344	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4531079	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4534147	0.85[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs4537328	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4596682	0.83[AMR][1000 genomes]
rs4639551	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873271	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4873788	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs61146557	0.84[AFR][1000 genomes]
rs6474074	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6994417	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6998272	0.84[AFR][1000 genomes]
rs7004828	0.84[AFR][1000 genomes]
rs7009463	0.84[AFR][1000 genomes]
rs7014393	0.84[AFR][1000 genomes]
rs7815183	0.85[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7838513	0.84[AFR][1000 genomes]
rs7841194	0.81[EUR][1000 genomes]
rs9657169	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1841988	chr8:49093467-49156411	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49101800-49110400	Weak transcription	Ovary	ovary
2	chr8:49104200-49115400	Weak transcription	Adipose Nuclei	Adipose
3	chr8:49105200-49108000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:49105200-49111000	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:49105400-49106800	Weak transcription	NHDF-Ad	bronchial
6	chr8:49105800-49106800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:49106000-49106800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:49106000-49107200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:49106600-49111000	Weak transcription	Fetal Muscle Trunk	muscle

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