Variant report

Variant	rs9657169
Chromosome Location	chr8:49104422-49104423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49101995..49104424-chr8:49230662..49232530,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10086138	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103627	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10106082	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110043	0.87[AFR][1000 genomes]
rs10216585	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10453133	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10958492	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10958493	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10958494	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11781426	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11783647	0.84[AFR][1000 genomes]
rs11783734	0.85[AFR][1000 genomes]
rs12155855	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12544623	0.85[AFR][1000 genomes]
rs12681895	0.82[ASN][1000 genomes]
rs12682398	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13252104	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13265298	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28421609	0.81[AFR][1000 genomes]
rs28539823	0.81[AFR][1000 genomes]
rs28678847	0.87[AFR][1000 genomes]
rs34568428	0.93[AFR][1000 genomes]
rs35088698	0.87[AFR][1000 genomes]
rs35578152	0.84[AFR][1000 genomes]
rs3934732	0.91[AFR][1000 genomes]
rs3934733	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3934734	0.91[AFR][1000 genomes]
rs3934735	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4072343	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4130803	0.88[AFR][1000 genomes]
rs4130805	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4242483	0.89[AFR][1000 genomes]
rs4242484	0.89[AFR][1000 genomes]
rs4242485	0.93[AFR][1000 genomes]
rs4263791	0.88[AFR][1000 genomes]
rs4329299	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4373544	0.91[AFR][1000 genomes]
rs4375031	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4380968	0.84[AFR][1000 genomes]
rs4397430	0.85[AFR][1000 genomes]
rs4475511	0.91[AFR][1000 genomes]
rs4526384	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4534147	0.91[AFR][1000 genomes]
rs4873788	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61146557	0.88[AFR][1000 genomes]
rs6474074	0.91[AFR][1000 genomes]
rs67441342	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6993968	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6994417	0.93[AFR][1000 genomes]
rs6998272	0.88[AFR][1000 genomes]
rs7004828	0.88[AFR][1000 genomes]
rs7009463	0.88[AFR][1000 genomes]
rs7014393	0.88[AFR][1000 genomes]
rs71548453	0.87[AMR][1000 genomes]
rs7815183	0.93[AFR][1000 genomes]
rs7816616	0.87[AMR][1000 genomes]
rs7820720	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7830031	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7838513	0.88[AFR][1000 genomes]
rs7844929	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298548	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1841988	chr8:49093467-49156411	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49101800-49110400	Weak transcription	Ovary	ovary
2	chr8:49102400-49104600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:49103400-49104600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:49103800-49105000	Enhancers	Fetal Muscle Trunk	muscle
5	chr8:49104200-49104600	Enhancers	Brain Cingulate Gyrus	brain
6	chr8:49104200-49105200	Enhancers	Fetal Muscle Leg	muscle
7	chr8:49104200-49105400	Enhancers	Brain Substantia Nigra	brain
8	chr8:49104200-49115400	Weak transcription	Adipose Nuclei	Adipose
9	chr8:49104400-49104800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:49104400-49105000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:49104400-49105200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:49104400-49105200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:49104400-49105200	Enhancers	Brain Hippocampus Middle	brain
14	chr8:49104400-49105400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:49104400-49105400	Enhancers	Osteobl	bone

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