Variant report

Variant	rs6993968
Chromosome Location	chr8:49081038-49081039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10086138	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10095363	0.88[AFR][1000 genomes]
rs10099232	0.89[AFR][1000 genomes]
rs10099601	0.85[AFR][1000 genomes]
rs10103627	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10105954	0.84[AFR][1000 genomes]
rs10106082	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10107062	0.88[AFR][1000 genomes]
rs10107500	0.85[AFR][1000 genomes]
rs10107531	0.81[AFR][1000 genomes]
rs10110043	0.80[AFR][1000 genomes]
rs10216490	0.81[AFR][1000 genomes]
rs10216585	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10453133	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12155855	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12682398	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12708172	0.83[AFR][1000 genomes]
rs12708173	0.82[AFR][1000 genomes]
rs12708174	0.83[AFR][1000 genomes]
rs13252104	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13265298	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28421609	0.85[AFR][1000 genomes]
rs28459674	0.85[AFR][1000 genomes]
rs28539823	0.85[AFR][1000 genomes]
rs28678298	0.89[AFR][1000 genomes]
rs28678847	0.80[AFR][1000 genomes]
rs34608684	0.81[AFR][1000 genomes]
rs34850099	0.81[AFR][1000 genomes]
rs35040443	0.81[AFR][1000 genomes]
rs3923232	0.83[AFR][1000 genomes]
rs3934733	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3934735	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4072343	0.86[ASN][1000 genomes]
rs4130803	0.81[AFR][1000 genomes]
rs4130805	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4242483	0.80[AFR][1000 genomes]
rs4242484	0.80[AFR][1000 genomes]
rs4263791	0.81[AFR][1000 genomes]
rs4329299	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4375031	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4433176	0.92[ASN][1000 genomes]
rs4526384	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4527898	0.84[AFR][1000 genomes]
rs4610781	0.82[AFR][1000 genomes]
rs4633086	0.90[ASN][1000 genomes]
rs4873781	0.85[AFR][1000 genomes]
rs4873782	0.85[AFR][1000 genomes]
rs4873783	0.85[AFR][1000 genomes]
rs4873784	0.88[AFR][1000 genomes]
rs4873785	0.88[AFR][1000 genomes]
rs61146557	0.81[AFR][1000 genomes]
rs67441342	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6986825	0.81[AFR][1000 genomes]
rs6994790	0.85[AFR][1000 genomes]
rs6998272	0.81[AFR][1000 genomes]
rs7000484	0.91[ASN][1000 genomes]
rs7004828	0.81[AFR][1000 genomes]
rs7009463	0.81[AFR][1000 genomes]
rs7011426	0.85[AFR][1000 genomes]
rs7014393	0.81[AFR][1000 genomes]
rs71548453	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7816616	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7820720	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7822672	0.84[AFR][1000 genomes]
rs7830031	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7838513	0.81[AFR][1000 genomes]
rs7844929	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9298548	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9657169	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49080200-49084600	Weak transcription	Placenta Amnion	Placenta Amnion

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