Variant report
| Variant | rs7816616 |
|---|---|
| Chromosome Location | chr8:49074232-49074233 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10086138 | 0.86[AMR][1000 genomes] |
| rs10103627 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10106082 | 0.82[AMR][1000 genomes] |
| rs10216585 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10453133 | 0.86[AMR][1000 genomes] |
| rs12155855 | 0.81[AMR][1000 genomes] |
| rs12682398 | 0.81[AMR][1000 genomes] |
| rs13252104 | 0.85[AMR][1000 genomes] |
| rs13265298 | 0.86[AMR][1000 genomes] |
| rs3934735 | 0.82[AMR][1000 genomes] |
| rs4130805 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4329299 | 0.86[AMR][1000 genomes] |
| rs4375031 | 0.85[AMR][1000 genomes] |
| rs4433176 | 0.88[ASN][1000 genomes] |
| rs4526384 | 0.86[AMR][1000 genomes] |
| rs4633086 | 0.91[ASN][1000 genomes] |
| rs67441342 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6993968 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7000484 | 0.87[ASN][1000 genomes] |
| rs71548453 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7820720 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7830031 | 0.83[AMR][1000 genomes] |
| rs7844929 | 0.82[AMR][1000 genomes] |
| rs9298548 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9657169 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931032 | chr8:48744329-49091359 | Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:49073200-49074400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
