Variant report

Variant	rs13252104
Chromosome Location	chr8:49097760-49097761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10086138	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10103627	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10106082	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10110043	0.81[AFR][1000 genomes]
rs10216585	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10453133	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10958492	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10958493	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10958494	0.90[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11781426	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12155855	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12681895	0.80[ASN][1000 genomes]
rs12682398	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13265298	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28678847	0.81[AFR][1000 genomes]
rs34568428	0.87[AFR][1000 genomes]
rs35088698	0.81[AFR][1000 genomes]
rs3934732	0.85[AFR][1000 genomes]
rs3934733	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3934734	0.85[AFR][1000 genomes]
rs3934735	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4072343	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4130803	0.82[AFR][1000 genomes]
rs4130805	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4242483	0.83[AFR][1000 genomes]
rs4242484	0.83[AFR][1000 genomes]
rs4242485	0.87[AFR][1000 genomes]
rs4263791	0.82[AFR][1000 genomes]
rs4329299	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4373544	0.85[AFR][1000 genomes]
rs4375031	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4475511	0.88[AFR][1000 genomes]
rs4526384	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4534147	1.00[ASW][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4873788	0.90[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61146557	0.82[AFR][1000 genomes]
rs6474074	0.85[AFR][1000 genomes]
rs67441342	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6993968	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6994417	0.87[AFR][1000 genomes]
rs6998272	0.82[AFR][1000 genomes]
rs7004828	0.82[AFR][1000 genomes]
rs7009463	0.82[AFR][1000 genomes]
rs7014393	0.82[AFR][1000 genomes]
rs71548453	0.85[AMR][1000 genomes]
rs7815183	1.00[ASW][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs7816616	0.85[AMR][1000 genomes]
rs7820720	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7830031	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7838513	0.82[AFR][1000 genomes]
rs7844929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9298548	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9657169	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1841988	chr8:49093467-49156411	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49085200-49098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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