Variant report

Variant	rs7820720
Chromosome Location	chr8:49074088-49074089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10086138	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10086728	0.83[AFR][1000 genomes]
rs10099232	0.81[AFR][1000 genomes]
rs10103627	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10104502	0.81[AFR][1000 genomes]
rs10106082	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10110043	0.91[AFR][1000 genomes]
rs10216585	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10453133	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10958494	0.92[YRI][hapmap]
rs12155855	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12544623	0.88[AFR][1000 genomes]
rs12682398	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13252104	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13265298	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13281542	0.82[AFR][1000 genomes]
rs28421609	0.85[AFR][1000 genomes]
rs28539823	0.85[AFR][1000 genomes]
rs28678298	0.81[AFR][1000 genomes]
rs28678847	0.91[AFR][1000 genomes]
rs34568428	0.87[AFR][1000 genomes]
rs35088698	0.90[AFR][1000 genomes]
rs35578152	0.88[AFR][1000 genomes]
rs3934732	0.89[AFR][1000 genomes]
rs3934733	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3934734	0.89[AFR][1000 genomes]
rs3934735	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4072343	0.83[ASN][1000 genomes]
rs4130803	0.92[AFR][1000 genomes]
rs4130805	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4242483	0.91[AFR][1000 genomes]
rs4242484	0.91[AFR][1000 genomes]
rs4242485	0.87[AFR][1000 genomes]
rs4263791	0.92[AFR][1000 genomes]
rs4329299	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4373544	0.89[AFR][1000 genomes]
rs4375031	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4380968	0.81[AFR][1000 genomes]
rs4397430	0.81[AFR][1000 genomes]
rs4433176	0.95[ASN][1000 genomes]
rs4475511	0.85[AFR][1000 genomes]
rs4526384	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4534147	0.94[ASW][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4633086	0.92[ASN][1000 genomes]
rs4873783	0.84[AFR][1000 genomes]
rs4873784	0.81[AFR][1000 genomes]
rs4873788	0.92[YRI][hapmap]
rs60275259	0.81[AFR][1000 genomes]
rs61146557	0.92[AFR][1000 genomes]
rs6474074	0.89[AFR][1000 genomes]
rs67441342	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6990698	0.83[AFR][1000 genomes]
rs6993968	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6994417	0.87[AFR][1000 genomes]
rs6998272	0.92[AFR][1000 genomes]
rs7000484	0.94[ASN][1000 genomes]
rs7004828	0.92[AFR][1000 genomes]
rs7009463	0.92[AFR][1000 genomes]
rs7011426	0.84[AFR][1000 genomes]
rs7014393	0.92[AFR][1000 genomes]
rs71548453	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7815183	0.94[ASW][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs7816616	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7830031	0.91[AMR][1000 genomes]
rs7838513	0.92[AFR][1000 genomes]
rs7844929	0.86[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9298548	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9657169	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49073200-49074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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