Variant report

Variant	rs3934733
Chromosome Location	chr8:49093501-49093502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10086138	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10103627	0.91[AFR][1000 genomes]
rs10106082	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10110043	0.84[AFR][1000 genomes]
rs10216585	0.83[ASN][1000 genomes]
rs10453133	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10958492	0.83[ASN][1000 genomes]
rs10958493	0.83[ASN][1000 genomes]
rs10958494	0.91[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes]
rs11781426	0.83[ASN][1000 genomes]
rs12155855	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12544623	0.82[AFR][1000 genomes]
rs12681895	0.81[ASN][1000 genomes]
rs12682398	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13252104	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13265298	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28678847	0.84[AFR][1000 genomes]
rs34568428	0.86[AFR][1000 genomes]
rs35088698	0.84[AFR][1000 genomes]
rs35578152	0.81[AFR][1000 genomes]
rs3934732	0.88[AFR][1000 genomes]
rs3934734	0.88[AFR][1000 genomes]
rs3934735	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072343	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130803	0.85[AFR][1000 genomes]
rs4130805	0.87[ASN][1000 genomes]
rs4242483	0.86[AFR][1000 genomes]
rs4242484	0.86[AFR][1000 genomes]
rs4242485	0.86[AFR][1000 genomes]
rs4263791	0.85[AFR][1000 genomes]
rs4329299	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4373544	0.88[AFR][1000 genomes]
rs4375031	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380968	0.81[AFR][1000 genomes]
rs4397430	0.81[AFR][1000 genomes]
rs4475511	0.85[AFR][1000 genomes]
rs4526384	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4534147	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4873788	0.91[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes]
rs61146557	0.85[AFR][1000 genomes]
rs6474074	0.88[AFR][1000 genomes]
rs67441342	0.96[ASN][1000 genomes]
rs6993968	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6994417	0.86[AFR][1000 genomes]
rs6998272	0.85[AFR][1000 genomes]
rs7004828	0.85[AFR][1000 genomes]
rs7009463	0.85[AFR][1000 genomes]
rs7014393	0.85[AFR][1000 genomes]
rs7815183	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs7820720	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7830031	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7838513	0.85[AFR][1000 genomes]
rs7844929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298548	0.82[ASN][1000 genomes]
rs9657169	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv611307	chr8:49081709-49093889	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3366505	chr8:49092649-49094997	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv824618	chr8:49092729-49093849	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv824619	chr8:49092774-49093849	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv12953	chr8:49092986-49093961	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv819150	chr8:49093138-49095727	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv824621	chr8:49093223-49093849	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv821514	chr8:49093223-49093961	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3481169	chr8:49093250-49094089	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv21261	chr8:49093271-49093961	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3508436	chr8:49093276-49094090	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3339241	chr8:49093285-49094060	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3508437	chr8:49093294-49094021	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3479176	chr8:49093295-49093865	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3479177	chr8:49093295-49093865	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3508439	chr8:49093323-49094029	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3508438	chr8:49093328-49094029	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3428594	chr8:49093348-49093999	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3481170	chr8:49093372-49093983	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3508435	chr8:49093382-49093982	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3481171	chr8:49093386-49093980	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv3508440	chr8:49093386-49093980	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	nsv611308	chr8:49093467-49093889	Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv1841988	chr8:49093467-49156411	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49085200-49098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49089600-49094000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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