Variant report

Variant	rs11775542
Chromosome Location	chr8:119763755-119763756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10505338	1.00[ASN][1000 genomes]
rs11773998	0.81[ASN][1000 genomes]
rs11774004	0.81[ASN][1000 genomes]
rs17683860	0.81[ASN][1000 genomes]
rs17757460	0.81[ASN][1000 genomes]
rs17830529	0.81[ASN][1000 genomes]
rs7002279	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465786	chr8:119627671-119767165	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv612048	chr8:119627671-119767165	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119756800-119776400	Weak transcription	Aorta	Aorta
2	chr8:119760400-119764600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:119761200-119763800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:119763000-119765000	Enhancers	Fetal Intestine Large	intestine
5	chr8:119763200-119764600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr8:119763200-119765000	Enhancers	Fetal Intestine Small	intestine
7	chr8:119763400-119764400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr8:119763600-119763800	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr8:119763600-119764000	Enhancers	Colonic Mucosa	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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