Variant report

Variant	rs17683860
Chromosome Location	chr8:119799880-119799881
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10505338	0.81[ASN][1000 genomes]
rs11773998	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774004	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775542	0.81[ASN][1000 genomes]
rs11776000	0.82[ASN][1000 genomes]
rs11776031	0.82[ASN][1000 genomes]
rs11779357	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11784196	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11786257	0.88[EUR][1000 genomes]
rs11997801	0.82[ASN][1000 genomes]
rs17751221	0.82[ASN][1000 genomes]
rs17757460	1.00[ASN][1000 genomes]
rs17830529	1.00[ASN][1000 genomes]
rs2875844	0.82[ASN][1000 genomes]
rs56112113	0.82[ASN][1000 genomes]
rs57152492	0.82[ASN][1000 genomes]
rs57450365	0.82[ASN][1000 genomes]
rs57898934	0.82[ASN][1000 genomes]
rs58159878	0.82[ASN][1000 genomes]
rs58396245	0.82[ASN][1000 genomes]
rs58958654	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59095144	0.82[ASN][1000 genomes]
rs73711934	0.82[ASN][1000 genomes]
rs903612	0.82[ASN][1000 genomes]
rs903613	0.82[ASN][1000 genomes]
rs903614	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119795600-119809200	Weak transcription	Aorta	Aorta
2	chr8:119799800-119800400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:119799800-119801400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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