Variant report

Variant	rs17830529
Chromosome Location	chr8:119802068-119802069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119796339..119798562-chr8:119800667..119802730,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505338	0.81[ASN][1000 genomes]
rs11773998	1.00[ASN][1000 genomes]
rs11774004	1.00[ASN][1000 genomes]
rs11775542	0.81[ASN][1000 genomes]
rs11776000	0.82[ASN][1000 genomes]
rs11776031	0.82[ASN][1000 genomes]
rs11779357	0.88[ASN][1000 genomes]
rs11784196	0.88[ASN][1000 genomes]
rs11997801	0.82[ASN][1000 genomes]
rs17683860	1.00[ASN][1000 genomes]
rs17751221	0.82[ASN][1000 genomes]
rs17757460	1.00[ASN][1000 genomes]
rs2875844	0.82[ASN][1000 genomes]
rs56112113	0.82[ASN][1000 genomes]
rs57152492	0.82[ASN][1000 genomes]
rs57450365	0.82[ASN][1000 genomes]
rs57898934	0.82[ASN][1000 genomes]
rs58159878	0.82[ASN][1000 genomes]
rs58396245	0.82[ASN][1000 genomes]
rs58958654	0.89[ASN][1000 genomes]
rs59095144	0.82[ASN][1000 genomes]
rs73711934	0.82[ASN][1000 genomes]
rs903612	0.82[ASN][1000 genomes]
rs903613	0.82[ASN][1000 genomes]
rs903614	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119795600-119809200	Weak transcription	Aorta	Aorta
2	chr8:119800800-119803600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:119800800-119804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:119801000-119804600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:119801000-119805000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:119801000-119809200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:119801200-119802400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:119801200-119803600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:119801200-119805000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:119801400-119802200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:119801400-119802200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:119801400-119803400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:119801400-119803600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:119801400-119803600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:119801400-119804600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:119801400-119804600	Weak transcription	Osteobl	bone
17	chr8:119801400-119805000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:119801400-119805000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links