Variant report

Variant	rs58958654
Chromosome Location	chr8:119783793-119783794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11773998	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11774004	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11779357	0.82[EUR][1000 genomes]
rs11784196	0.93[EUR][1000 genomes]
rs11786257	0.87[EUR][1000 genomes]
rs11787376	0.89[AFR][1000 genomes]
rs17683860	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17757460	0.89[ASN][1000 genomes]
rs17830529	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119779600-119795200	Weak transcription	Aorta	Aorta
2	chr8:119780800-119784800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:119782000-119785400	Weak transcription	Osteobl	bone
4	chr8:119782000-119792400	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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