Variant report

Variant	rs11775899
Chromosome Location	chr8:95866218-95866219
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95864159..95866873-chr8:95868899..95870805,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164941	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10956927	0.82[EUR][1000 genomes]
rs11776489	0.82[EUR][1000 genomes]
rs11776687	0.82[EUR][1000 genomes]
rs11776830	0.88[EUR][1000 genomes]
rs11777353	0.82[EUR][1000 genomes]
rs11778250	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11779041	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11781429	0.82[EUR][1000 genomes]
rs11781712	0.90[ASN][1000 genomes]
rs11782617	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11783589	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11783941	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11784299	0.82[EUR][1000 genomes]
rs11786088	0.82[EUR][1000 genomes]
rs11786389	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11786451	0.80[EUR][1000 genomes]
rs11787377	0.82[EUR][1000 genomes]
rs12056517	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12056808	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16917079	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16917081	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16917082	0.82[EUR][1000 genomes]
rs16917093	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917102	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16917106	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17359493	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4075834	0.82[EUR][1000 genomes]
rs4345531	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4355737	0.82[EUR][1000 genomes]
rs57063661	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58675831	0.82[EUR][1000 genomes]
rs59091366	0.82[EUR][1000 genomes]
rs59265059	0.82[EUR][1000 genomes]
rs59521030	0.82[EUR][1000 genomes]
rs60171840	0.82[EUR][1000 genomes]
rs6986418	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6989591	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7009940	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs716733	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73269162	0.89[EUR][1000 genomes]
rs73269170	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73269188	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73269191	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73269198	0.82[EUR][1000 genomes]
rs73269199	0.82[EUR][1000 genomes]
rs73271148	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7834966	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7844932	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11775899	INTS8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95836800-95866800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:95836800-95874600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:95837000-95905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:95837400-95898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:95837600-95869800	Weak transcription	Psoas Muscle	Psoas
6	chr8:95838200-95905600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:95838800-95876000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:95839400-95872200	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr8:95839400-95872400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:95839400-95872400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:95839400-95872400	Strong transcription	Dnd41	blood
12	chr8:95839400-95872600	Strong transcription	Liver	Liver
13	chr8:95839400-95872600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr8:95839400-95904400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:95839600-95873400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:95839600-95873400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:95840600-95873000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:95845800-95872600	Strong transcription	Placenta	Placenta
19	chr8:95847400-95873000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:95847400-95890800	Weak transcription	Stomach Mucosa	stomach
21	chr8:95848400-95873000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:95848800-95869000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:95849800-95872200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:95849800-95873000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:95850400-95872600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:95850600-95872600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:95851400-95869000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:95851400-95870000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:95851400-95871800	Weak transcription	Fetal Heart	heart
30	chr8:95851600-95874200	Weak transcription	Pancreas	Pancrea
31	chr8:95852400-95867000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:95854600-95872400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:95855400-95867000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:95855600-95873800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr8:95855600-95874200	Strong transcription	Fetal Thymus	thymus
36	chr8:95855800-95873000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr8:95856200-95866600	Weak transcription	Brain Substantia Nigra	brain
38	chr8:95856200-95866800	Weak transcription	HepG2	liver
39	chr8:95856200-95868000	Weak transcription	Fetal Brain Male	brain
40	chr8:95856800-95868000	Weak transcription	Spleen	Spleen
41	chr8:95856800-95872600	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr8:95857000-95869400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr8:95857200-95867800	Weak transcription	NHEK	skin
44	chr8:95857200-95872200	Strong transcription	Fetal Lung	lung
45	chr8:95857600-95868800	Weak transcription	Right Ventricle	heart
46	chr8:95857800-95866800	Weak transcription	Esophagus	oesophagus
47	chr8:95858800-95872200	Strong transcription	HSMM	muscle
48	chr8:95859000-95872400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:95859400-95869600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr8:95859400-95872600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links