Variant report

Variant	rs73269162
Chromosome Location	chr8:95823639-95823640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:95823618-95823759	HepG2	liver:	n/a	chr8:95823700-95823711
2	CEBPB	chr8:95823619-95823800	HepG2	liver:	n/a	chr8:95823700-95823711

No.	Distal block	Cell Line	Cell type
1	chr8:95823624..95825340-chr8:95828909..95830568,2	K562	blood:
2	chr8:95730308..95733697-chr8:95819325..95823735,5	MCF-7	breast:
3	chr8:95817537..95820508-chr8:95822218..95824582,2	MCF-7	breast:

Variant related genes	Relation type
INTS8	TF binding region
ENSG00000156162	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10956927	0.90[ASN][1000 genomes]
rs11774806	0.93[ASN][1000 genomes]
rs11775899	0.89[EUR][1000 genomes]
rs11776131	0.97[ASN][1000 genomes]
rs11776489	0.97[ASN][1000 genomes]
rs11776687	0.93[ASN][1000 genomes]
rs11777353	0.90[ASN][1000 genomes]
rs11778250	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11779041	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11779252	0.88[ASN][1000 genomes]
rs11781099	0.93[ASN][1000 genomes]
rs11781188	0.90[ASN][1000 genomes]
rs11781429	0.93[ASN][1000 genomes]
rs11781843	0.97[ASN][1000 genomes]
rs11783589	0.93[ASN][1000 genomes]
rs11783941	0.83[EUR][1000 genomes]
rs11784299	0.90[ASN][1000 genomes]
rs11786021	0.93[ASN][1000 genomes]
rs11786088	0.93[ASN][1000 genomes]
rs11786389	0.93[ASN][1000 genomes]
rs11786429	0.97[ASN][1000 genomes]
rs11787377	0.93[ASN][1000 genomes]
rs11787442	0.93[ASN][1000 genomes]
rs16917079	0.93[ASN][1000 genomes]
rs16917081	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917082	0.93[ASN][1000 genomes]
rs16917102	0.87[EUR][1000 genomes]
rs16917106	0.83[EUR][1000 genomes]
rs17359493	0.93[ASN][1000 genomes]
rs4073916	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4075834	0.93[ASN][1000 genomes]
rs4345531	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4355737	0.97[ASN][1000 genomes]
rs57063661	0.93[ASN][1000 genomes]
rs57773845	0.93[ASN][1000 genomes]
rs58489999	0.90[ASN][1000 genomes]
rs58675831	0.90[ASN][1000 genomes]
rs59091366	0.93[ASN][1000 genomes]
rs59265059	0.93[ASN][1000 genomes]
rs59521030	0.93[ASN][1000 genomes]
rs60171840	0.93[ASN][1000 genomes]
rs6986418	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7009940	0.87[EUR][1000 genomes]
rs716733	0.83[EUR][1000 genomes]
rs73269170	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269188	0.93[ASN][1000 genomes]
rs73269191	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73269198	0.93[ASN][1000 genomes]
rs73269199	0.93[ASN][1000 genomes]
rs7834966	0.93[ASN][1000 genomes]
rs7844932	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95815800-95826600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:95818000-95824400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:95823600-95823800	Enhancers	Sigmoid Colon	Sigmoid Colon

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