Variant report

Variant	rs11781188
Chromosome Location	chr8:95815987-95815988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10956927	0.87[ASN][1000 genomes]
rs11774806	0.90[ASN][1000 genomes]
rs11776131	0.93[ASN][1000 genomes]
rs11776489	0.93[ASN][1000 genomes]
rs11776687	0.90[ASN][1000 genomes]
rs11777353	0.87[ASN][1000 genomes]
rs11778250	0.87[ASN][1000 genomes]
rs11779041	0.87[ASN][1000 genomes]
rs11779252	0.85[ASN][1000 genomes]
rs11781099	0.90[ASN][1000 genomes]
rs11781429	0.90[ASN][1000 genomes]
rs11781843	0.93[ASN][1000 genomes]
rs11783589	0.90[ASN][1000 genomes]
rs11784299	0.87[ASN][1000 genomes]
rs11786021	0.90[ASN][1000 genomes]
rs11786088	0.90[ASN][1000 genomes]
rs11786389	0.90[ASN][1000 genomes]
rs11786429	0.93[ASN][1000 genomes]
rs11787377	0.90[ASN][1000 genomes]
rs11787442	0.90[ASN][1000 genomes]
rs16917079	0.90[ASN][1000 genomes]
rs16917081	0.87[ASN][1000 genomes]
rs16917082	0.90[ASN][1000 genomes]
rs17359493	0.90[ASN][1000 genomes]
rs4073916	0.93[ASN][1000 genomes]
rs4075834	0.90[ASN][1000 genomes]
rs4345531	0.87[ASN][1000 genomes]
rs4355737	0.93[ASN][1000 genomes]
rs57063661	0.90[ASN][1000 genomes]
rs57773845	0.90[ASN][1000 genomes]
rs58489999	0.87[ASN][1000 genomes]
rs58675831	0.87[ASN][1000 genomes]
rs59091366	0.90[ASN][1000 genomes]
rs59265059	0.90[ASN][1000 genomes]
rs59521030	0.90[ASN][1000 genomes]
rs60171840	0.90[ASN][1000 genomes]
rs6986418	0.87[ASN][1000 genomes]
rs73269162	0.90[ASN][1000 genomes]
rs73269170	0.90[ASN][1000 genomes]
rs73269188	0.90[ASN][1000 genomes]
rs73269191	0.87[ASN][1000 genomes]
rs73269198	0.90[ASN][1000 genomes]
rs73269199	0.90[ASN][1000 genomes]
rs7834966	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11781188	INTS8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95810200-95818800	Weak transcription	K562	blood
2	chr8:95810200-95819600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:95815800-95826600	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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