Variant report

Variant	rs11776378
Chromosome Location	chr8:103992442-103992443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11773935	0.92[EUR][1000 genomes]
rs11776102	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11778351	0.86[EUR][1000 genomes]
rs11781860	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11987421	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13249382	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13249414	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13257502	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13258117	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13267736	0.88[EUR][1000 genomes]
rs1512349	0.84[EUR][1000 genomes]
rs34805714	0.80[EUR][1000 genomes]
rs35746971	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35956387	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103981200-103992600	Weak transcription	Brain Substantia Nigra	brain
2	chr8:103989800-103993200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
4	chr8:103990600-103992800	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr8:103991000-103993200	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr8:103991200-103995800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:103991600-103992600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:103991600-103992600	Flanking Active TSS	GM12878-XiMat	blood
9	chr8:103991800-103992600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:103992000-103992800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:103992000-103992800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:103992000-103993600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr8:103992200-103992600	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr8:103992200-103992600	Bivalent Enhancer	NHDF-Ad	bronchial
15	chr8:103992200-103993000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr8:103992200-103993400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr8:103992200-103993600	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr8:103992400-103992600	Enhancers	NHLF	lung
19	chr8:103992400-103992800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:103992400-103992800	Active TSS	Brain Hippocampus Middle	brain
21	chr8:103992400-103993400	Enhancers	Spleen	Spleen
22	chr8:103992400-103993600	Enhancers	Primary B cells from peripheral blood	blood

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