Variant report

Variant	rs11987421
Chromosome Location	chr8:104008466-104008467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103996495..103999134-chr8:104007444..104009301,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11773935	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11775734	0.88[ASN][1000 genomes]
rs11776102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11776378	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11778351	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11781860	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13249382	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13249414	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13257502	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13258117	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13267736	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1512349	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34805714	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35746971	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35956387	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57902227	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:104001600-104008800	Weak transcription	Brain Substantia Nigra	brain
4	chr8:104001600-104011400	Weak transcription	Fetal Brain Male	brain
5	chr8:104004000-104010200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:104006600-104008600	Strong transcription	Primary B cells from cord blood	blood
7	chr8:104006600-104009000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:104006600-104009200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:104006800-104009000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:104006800-104009200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:104006800-104012400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:104007000-104008600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr8:104007000-104008600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr8:104007200-104008800	Enhancers	HSMM	muscle
15	chr8:104007200-104014400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:104007400-104008800	Enhancers	HSMMtube	muscle
17	chr8:104007600-104008600	Enhancers	NHLF	lung
18	chr8:104007600-104008600	Enhancers	Osteobl	bone
19	chr8:104007600-104009000	Enhancers	NHDF-Ad	bronchial
20	chr8:104007600-104010600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:104007600-104010600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:104007600-104011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:104007600-104011800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:104007600-104014200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:104007800-104008600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:104008000-104012200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr8:104008200-104008600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links