Variant report

Variant	rs57902227
Chromosome Location	chr8:104024409-104024410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11773935	0.97[ASN][1000 genomes]
rs11775734	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11776102	0.96[ASN][1000 genomes]
rs11778351	0.97[ASN][1000 genomes]
rs11781860	0.97[ASN][1000 genomes]
rs11987421	0.96[ASN][1000 genomes]
rs13249382	0.97[ASN][1000 genomes]
rs13249414	0.97[ASN][1000 genomes]
rs13257502	0.92[ASN][1000 genomes]
rs13258117	0.94[ASN][1000 genomes]
rs13267736	0.82[ASN][1000 genomes]
rs1512349	1.00[ASN][1000 genomes]
rs17790247	0.82[EUR][1000 genomes]
rs35746971	0.97[ASN][1000 genomes]
rs35956387	0.93[ASN][1000 genomes]
rs6468858	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104023200-104032000	Weak transcription	K562	blood
2	chr8:104023200-104032800	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links