Variant report

Variant	rs11773935
Chromosome Location	chr8:104001908-104001909
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11775734	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs11776102	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11776378	0.92[EUR][1000 genomes]
rs11778351	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781860	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987421	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13249382	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249414	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257502	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13258117	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13267736	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1512349	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790247	0.83[CEU][hapmap]
rs34805714	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35746971	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35956387	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57902227	0.97[ASN][1000 genomes]
rs6468858	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv611831	chr8:103995624-104002664	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:103996400-104003200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:103996400-104003200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:103999000-104003800	Weak transcription	Gastric	stomach
6	chr8:103999200-104002600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:104000000-104007000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:104000200-104006800	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:104001000-104007000	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:104001400-104002000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:104001400-104002800	Strong transcription	Primary B cells from cord blood	blood
12	chr8:104001600-104002000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
13	chr8:104001600-104008800	Weak transcription	Brain Substantia Nigra	brain
14	chr8:104001600-104011400	Weak transcription	Fetal Brain Male	brain
15	chr8:104001800-104002000	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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