Variant report

Variant	rs11776646
Chromosome Location	chr8:39978060-39978061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:39977842..39980736-chr8:40008820..40011778,2	MCF-7	breast:
2	chr8:39956140..39958982-chr8:39975836..39978547,3	MCF-7	breast:
3	chr8:39976602..39978304-chr8:40014448..40017258,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176907	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16888829	0.88[EUR][1000 genomes]
rs28626858	0.88[EUR][1000 genomes]
rs4367521	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs4370521	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs4737044	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs60884501	0.88[EUR][1000 genomes]
rs7008253	0.82[ASN][1000 genomes]
rs7829090	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39973600-39982400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:39973600-39984000	Weak transcription	Left Ventricle	heart
3	chr8:39974200-39981400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:39976200-39978400	Enhancers	HepG2	liver
5	chr8:39976400-39978400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:39976400-39978400	Enhancers	Pancreas	Pancrea
7	chr8:39976600-39981400	Weak transcription	Adipose Nuclei	Adipose
8	chr8:39976600-39981400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:39976800-39981400	Weak transcription	Fetal Intestine Small	intestine
10	chr8:39976800-39981400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:39976800-39981800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:39977000-39978600	Enhancers	HUVEC	blood vessel
13	chr8:39977000-39981200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:39977000-39981800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:39977200-39980000	Enhancers	A549	lung
16	chr8:39977200-39981000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:39977200-39981200	Weak transcription	Stomach Mucosa	stomach
18	chr8:39977200-39981400	Weak transcription	NH-A	brain
19	chr8:39977400-39981600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:39977800-39978400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:39978000-39978200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:39978000-39978400	Weak transcription	Fetal Lung	lung
23	chr8:39978000-39981400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:39978000-39981600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:39978000-39981600	Weak transcription	Hela-S3	cervix

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