Variant report

Variant	rs4370521
Chromosome Location	chr8:39969392-39969393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10958600	0.81[CHB][hapmap]
rs11776646	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs13257096	0.82[CEU][hapmap]
rs1471559	0.81[CHB][hapmap]
rs16888829	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28626858	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4737044	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60884501	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7008253	0.87[ASN][1000 genomes]
rs7829090	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4370521	STAR	cis	parietal	SCAN
rs4370521	ERLIN2	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39958000-39970800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:39959600-39976400	Weak transcription	Pancreas	Pancrea
3	chr8:39961800-39970400	Weak transcription	Placenta	Placenta
4	chr8:39967200-39971800	Weak transcription	Ovary	ovary
5	chr8:39967400-39976400	Weak transcription	Stomach Mucosa	stomach
6	chr8:39968600-39970800	Enhancers	Rectal Smooth Muscle	rectum
7	chr8:39969000-39969400	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr8:39969000-39972600	Enhancers	A549	lung
9	chr8:39969200-39970200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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