Variant report

Variant	rs7829090
Chromosome Location	chr8:39972943-39972944
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:39968374..39970681-chr8:39972248..39974397,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11776646	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs13257096	0.83[CEU][hapmap]
rs16888829	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626858	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4370521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4737044	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60884501	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008253	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39959600-39976400	Weak transcription	Pancreas	Pancrea
2	chr8:39967400-39976400	Weak transcription	Stomach Mucosa	stomach
3	chr8:39970800-39976400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:39971400-39973000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:39971400-39976400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:39971800-39973400	Enhancers	Ovary	ovary
7	chr8:39971800-39973600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:39972000-39973200	Weak transcription	HUVEC	blood vessel
9	chr8:39972000-39973600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:39972000-39973600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:39972000-39974200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:39972200-39973200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:39972200-39974200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:39972200-39975600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:39972600-39973000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr8:39972600-39973600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:39972600-39973600	Flanking Active TSS	A549	lung
18	chr8:39972600-39973800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:39972600-39973800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:39972600-39973800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:39972800-39973000	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr8:39972800-39973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:39972800-39973800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:39972800-39973800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr8:39972800-39976400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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