Variant report

Variant	rs11778323
Chromosome Location	chr8:131426458-131426459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131424461..131426779-chr8:131428555..131431451,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10091450	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10098396	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10098622	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10100892	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10103280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11786359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1426101	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16904259	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554369	1.00[CHB][hapmap]
rs2554372	0.82[CHB][hapmap]
rs2670885	0.87[CEU][hapmap];0.94[CHB][hapmap]
rs2670888	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2670890	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2791338	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2791342	1.00[CHB][hapmap]
rs2791350	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2943086	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs35977498	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4733575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72724494	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72726224	0.87[EUR][1000 genomes]
rs73713907	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7816836	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9297805	0.82[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
2	chr8:131409200-131431800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:131409600-131428400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:131414400-131431400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:131414600-131431000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:131417000-131440600	Weak transcription	Fetal Kidney	kidney
7	chr8:131417200-131428000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:131418600-131428200	Weak transcription	HMEC	breast
9	chr8:131420200-131428200	Weak transcription	NHDF-Ad	bronchial
10	chr8:131420600-131428000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:131420600-131428000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:131420600-131428200	Weak transcription	NHLF	lung
13	chr8:131421000-131428400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:131421000-131433400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:131422000-131431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:131422200-131428200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:131422200-131431200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:131422400-131428200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:131423000-131428600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:131423200-131428400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:131423400-131428200	Enhancers	HUVEC	blood vessel
22	chr8:131423800-131429400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr8:131424200-131428000	Weak transcription	NH-A	brain
24	chr8:131424200-131428400	Weak transcription	Psoas Muscle	Psoas
25	chr8:131424200-131428400	Weak transcription	Osteobl	bone
26	chr8:131424200-131429000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:131424400-131426600	Weak transcription	Primary B cells from cord blood	blood
28	chr8:131424400-131427200	Weak transcription	Brain Germinal Matrix	brain
29	chr8:131424400-131427600	Weak transcription	Left Ventricle	heart
30	chr8:131424400-131428000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:131424400-131428000	Weak transcription	Fetal Thymus	thymus
32	chr8:131424400-131428000	Weak transcription	GM12878-XiMat	blood
33	chr8:131424400-131428000	Weak transcription	HSMM	muscle
34	chr8:131424400-131428000	Weak transcription	HSMMtube	muscle
35	chr8:131424400-131428000	Weak transcription	NHEK	skin
36	chr8:131424400-131428200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:131424400-131428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:131424400-131428400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:131424400-131428400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:131424400-131428400	Weak transcription	Right Atrium	heart
41	chr8:131424400-131428400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr8:131424400-131428600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:131424400-131428800	Weak transcription	Right Ventricle	heart
44	chr8:131424400-131428800	Weak transcription	Spleen	Spleen
45	chr8:131424400-131430000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:131424400-131431200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr8:131424600-131427600	Weak transcription	Adipose Nuclei	Adipose
48	chr8:131424600-131433800	Weak transcription	HepG2	liver
49	chr8:131424800-131427600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:131424800-131427800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links