Variant report

Variant	rs11786359
Chromosome Location	chr8:131431396-131431397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131424461..131426779-chr8:131428555..131431451,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10091450	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10098396	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10098622	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10100892	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10103280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11778323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1426101	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16904259	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554369	1.00[CHB][hapmap]
rs2554372	0.82[CHB][hapmap]
rs2670885	0.87[CEU][hapmap];0.94[CHB][hapmap]
rs2670888	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2670890	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2791338	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2791342	1.00[CHB][hapmap]
rs2791350	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2943086	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs35977498	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4733575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72724494	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72726224	0.88[EUR][1000 genomes]
rs73713907	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7816836	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9297805	0.82[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
2	chr8:131409200-131431800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:131414400-131431400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:131417000-131440600	Weak transcription	Fetal Kidney	kidney
5	chr8:131421000-131433400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:131422000-131431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:131424600-131433800	Weak transcription	HepG2	liver
8	chr8:131427200-131433200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:131427600-131432400	Enhancers	Fetal Muscle Trunk	muscle
10	chr8:131427600-131432600	Enhancers	Fetal Muscle Leg	muscle
11	chr8:131427800-131433400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:131428000-131431600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:131428200-131435200	Enhancers	Left Ventricle	heart
14	chr8:131428600-131432400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr8:131428800-131431400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:131428800-131431800	Enhancers	HUVEC	blood vessel
17	chr8:131429000-131431400	Weak transcription	Fetal Stomach	stomach
18	chr8:131429000-131431600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:131429000-131446800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:131429000-131454800	Weak transcription	Aorta	Aorta
21	chr8:131429200-131432400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:131429200-131434400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:131429200-131444800	Weak transcription	HSMMtube	muscle
24	chr8:131429400-131434000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:131429400-131436600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:131429400-131440200	Weak transcription	Pancreas	Pancrea
27	chr8:131429400-131442600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:131429400-131447200	Weak transcription	Gastric	stomach
29	chr8:131429400-131449400	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:131429600-131431400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:131429600-131432200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:131429600-131433800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:131429600-131438200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:131429600-131453800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr8:131429800-131431600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:131430000-131431400	Weak transcription	Brain Substantia Nigra	brain
37	chr8:131430000-131431400	Strong transcription	NHEK	skin
38	chr8:131430000-131431600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:131430200-131432000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr8:131430400-131431400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:131430400-131431600	Weak transcription	Brain Germinal Matrix	brain
42	chr8:131430400-131431800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr8:131430400-131433800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:131430400-131434200	Weak transcription	HSMM	muscle
45	chr8:131430400-131434400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr8:131430800-131432800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:131431000-131431400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:131431000-131432200	Enhancers	Lung	lung
49	chr8:131431000-131432200	Enhancers	NHDF-Ad	bronchial
50	chr8:131431000-131432400	Bivalent Enhancer	Fetal Lung	lung

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