Variant report
| Variant | rs11779350 |
|---|---|
| Chromosome Location | chr8:66757209-66757210 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr8:66757041-66757303 | IMR90 | lung: | n/a | chr8:66757126-66757141 |
| 2 | MAFK | chr8:66756950-66757308 | HepG2 | liver: | n/a | chr8:66757126-66757141 |
| 3 | KAP1 | chr8:66756848-66758103 | K562 | blood: | n/a | n/a |
| 4 | MAFK | chr8:66756954-66757293 | HepG2 | liver: | n/a | chr8:66757126-66757141 |
| 5 | MAFF | chr8:66756974-66757292 | HepG2 | liver: | n/a | chr8:66757124-66757142 |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:66756263..66758077-chr8:66774849..66777339,2 | MCF-7 | breast: | |
| 2 | chr8:66674293..66677206-chr8:66756222..66757847,2 | K562 | blood: | |
| 3 | chr8:66752979..66755042-chr8:66757030..66760922,3 | MCF-7 | breast: | |
| 4 | chr8:66755086..66757057-chr8:66757170..66760034,2 | MCF-7 | breast: | |
| 5 | chr8:66751463..66756785-chr8:66757093..66762344,8 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PDE7A | TF binding region |
| ENSG00000205268 | Chromatin interaction |
| ENSG00000272192 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11774586 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11776756 | 0.93[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs11777019 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11783534 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11784267 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11987993 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs2357474 | 0.88[CEU][hapmap] |
| rs55738339 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs56295337 | 0.91[EUR][1000 genomes] |
| rs6982469 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6992865 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1793412 | chr8:66705321-66761366 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
