Variant report

Variant	rs56295337
Chromosome Location	chr8:66690940-66690941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66689911..66693837-chr8:66694545..66697182,4	K562	blood:
2	chr8:66688789..66692346-chr8:66692358..66695249,3	MCF-7	breast:
3	chr8:66689911..66692422-chr8:66694322..66696808,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11774586	0.96[EUR][1000 genomes]
rs11776756	0.97[EUR][1000 genomes]
rs11777019	0.86[EUR][1000 genomes]
rs11779350	0.91[EUR][1000 genomes]
rs11783534	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11784267	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987993	0.99[EUR][1000 genomes]
rs1355830	0.82[EUR][1000 genomes]
rs2357474	0.80[EUR][1000 genomes]
rs55738339	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6982469	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992865	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7845030	0.82[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:66674200-66695000	Weak transcription	Brain Angular Gyrus	brain
3	chr8:66678600-66701400	Weak transcription	Ovary	ovary
4	chr8:66686000-66694400	ZNF genes & repeats	GM12878-XiMat	blood
5	chr8:66686200-66691400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:66686200-66693800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:66686200-66693800	ZNF genes & repeats	Primary B cells from cord blood	blood
8	chr8:66687000-66693200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:66687000-66693600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr8:66687000-66693600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:66687000-66693600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:66687000-66694200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:66687200-66691200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
14	chr8:66687200-66691400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:66687200-66693200	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr8:66687200-66693400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:66687200-66693800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:66687200-66694200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:66687600-66691400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr8:66687600-66691400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
21	chr8:66687600-66691400	ZNF genes & repeats	A549	lung
22	chr8:66687600-66691600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr8:66687600-66693800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr8:66687800-66691400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr8:66688000-66693000	Weak transcription	Psoas Muscle	Psoas
26	chr8:66688200-66694200	Strong transcription	Fetal Lung	lung
27	chr8:66688200-66706200	Weak transcription	Brain Anterior Caudate	brain
28	chr8:66688400-66693400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr8:66688400-66693400	Weak transcription	Placenta	Placenta
30	chr8:66688600-66694000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr8:66688600-66695200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:66689000-66694800	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr8:66689200-66693400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:66689200-66694200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:66689200-66695400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:66689200-66695600	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:66689200-66707200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr8:66689400-66691000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:66689400-66691600	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr8:66689600-66691600	Strong transcription	Fetal Kidney	kidney
41	chr8:66689600-66694800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:66689800-66691200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:66689800-66691400	ZNF genes & repeats	HMEC	breast
44	chr8:66689800-66691600	ZNF genes & repeats	NHEK	skin
45	chr8:66689800-66693800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:66689800-66694000	Strong transcription	K562	blood
47	chr8:66689800-66694200	Strong transcription	Brain Substantia Nigra	brain
48	chr8:66690000-66691000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:66690000-66691000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
50	chr8:66690000-66691400	Strong transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links