The 2.0 version of rSNPBase

Variant report

Variant rs11780712
Chromosome Location chr8:125619875-125619876
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:125602000-125620400 Weak transcription HMEC breast
2 chr8:125603400-125625800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr8:125610600-125622800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr8:125612000-125621800 Enhancers Spleen Spleen
5 chr8:125613200-125622800 Weak transcription Gastric stomach
6 chr8:125614000-125621200 Enhancers Primary monocytes fromperipheralblood blood
7 chr8:125614000-125628800 Enhancers Liver Liver
8 chr8:125614200-125622400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr8:125614400-125627400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr8:125614800-125625600 Enhancers Fetal Muscle Leg muscle
11 chr8:125615400-125622800 Enhancers Fetal Adrenal Gland Adrenal Gland
12 chr8:125615800-125620800 Enhancers K562 blood
13 chr8:125616000-125621000 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr8:125616000-125630200 Weak transcription Rectal Smooth Muscle rectum
15 chr8:125617200-125621400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr8:125617200-125622200 Enhancers Right Atrium heart
17 chr8:125617400-125626000 Weak transcription Fetal Intestine Small intestine
18 chr8:125617400-125626200 Enhancers Fetal Thymus thymus
19 chr8:125617600-125620400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr8:125617600-125621000 Enhancers Monocytes-CD14+_RO01746 blood
21 chr8:125617600-125625000 Enhancers Fetal Brain Male brain
22 chr8:125617600-125627000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr8:125617600-125627400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr8:125617600-125631400 Enhancers Skeletal Muscle Male skeletal muscle
25 chr8:125617800-125620000 Enhancers Primary hematopoietic stem cells blood
26 chr8:125617800-125620600 Weak transcription Duodenum Mucosa Duodenum
27 chr8:125617800-125622400 Weak transcription Fetal Stomach stomach
28 chr8:125617800-125622600 Weak transcription NHDF-Ad bronchial
29 chr8:125617800-125623000 Enhancers Brain Hippocampus Middle brain
30 chr8:125617800-125623600 Enhancers Brain Cingulate Gyrus brain
31 chr8:125617800-125628600 Enhancers Primary B cells from peripheral blood blood
32 chr8:125618000-125620400 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr8:125618000-125620600 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr8:125618000-125621200 Enhancers Primary hematopoietic stem cells short term culture blood
35 chr8:125618000-125621400 Weak transcription Pancreas Pancrea
36 chr8:125618000-125622200 Enhancers Brain Germinal Matrix brain
37 chr8:125618000-125623600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr8:125618000-125624400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr8:125618000-125626200 Enhancers Thymus Thymus
40 chr8:125618000-125632800 Weak transcription HUVEC blood vessel
41 chr8:125618000-125640400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr8:125618200-125624200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
43 chr8:125618400-125620200 Enhancers Psoas Muscle Psoas
44 chr8:125618400-125620600 Enhancers Brain Anterior Caudate brain
45 chr8:125618400-125621000 Enhancers Brain Inferior Temporal Lobe brain
46 chr8:125618600-125623400 Enhancers Right Ventricle heart
47 chr8:125618600-125626200 Enhancers Fetal Heart heart
48 chr8:125618800-125620800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
49 chr8:125618800-125620800 Enhancers Brain Angular Gyrus brain
50 chr8:125618800-125621200 Flanking Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015