Variant report

Variant	rs11781302
Chromosome Location	chr8:49064827-49064828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11776380	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11778329	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11783856	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13272393	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6991823	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72633941	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72633943	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72633944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49051800-49065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:49056200-49066000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:49064200-49065400	Weak transcription	HepG2	liver
4	chr8:49064200-49067800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:49064400-49065600	Weak transcription	Fetal Intestine Large	intestine
6	chr8:49064400-49069200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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