Variant report

Variant	rs11783856
Chromosome Location	chr8:49101815-49101816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11776380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11778329	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11781302	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13272393	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6991823	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72633941	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72633943	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72633944	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1841988	chr8:49093467-49156411	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49099600-49102400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:49100400-49103400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:49100600-49102200	Enhancers	Fetal Muscle Trunk	muscle
4	chr8:49100600-49102400	Enhancers	Adipose Nuclei	Adipose
5	chr8:49100800-49102200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:49100800-49102200	Enhancers	Fetal Muscle Leg	muscle
7	chr8:49101800-49110400	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links