Variant report

Variant	rs11782457
Chromosome Location	chr8:105483963-105483964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:105483948-105483978	Fibrobl	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105483550..105485713-chr8:105489213..105491392,2	K562	blood:

Variant related genes	Relation type
DPYS	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11779233	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781863	0.88[ASN][1000 genomes]
rs11783651	0.81[AMR][1000 genomes]
rs11784193	0.81[AMR][1000 genomes]
rs11785071	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11787202	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989936	0.88[ASN][1000 genomes]
rs12680652	0.81[AMR][1000 genomes]
rs12682004	0.94[ASN][1000 genomes]
rs13250948	0.81[AMR][1000 genomes]
rs13266739	0.81[AMR][1000 genomes]
rs13279448	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16871500	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34145689	0.81[AMR][1000 genomes]
rs34155810	0.81[AMR][1000 genomes]
rs34255383	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34299626	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34435802	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34493777	0.90[AMR][1000 genomes]
rs34873943	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35013911	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35349928	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35767747	0.90[AMR][1000 genomes]
rs6990243	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6994764	0.85[AMR][1000 genomes]
rs71520889	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520891	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71520892	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520893	0.90[AMR][1000 genomes]
rs71520897	0.81[AMR][1000 genomes]
rs7842204	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845137	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105483600-105485600	Enhancers	Liver	Liver
2	chr8:105483800-105484200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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