Variant report

Variant	rs35013911
Chromosome Location	chr8:105505418-105505419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105499986..105502315-chr8:105504573..105506313,2	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10505062	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10808392	0.88[ASN][1000 genomes]
rs11775166	0.81[EUR][1000 genomes]
rs11775331	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11776230	0.84[EUR][1000 genomes]
rs11777528	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779233	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11781863	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782169	0.83[EUR][1000 genomes]
rs11782457	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11782889	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783063	0.86[EUR][1000 genomes]
rs11783104	0.84[EUR][1000 genomes]
rs11783651	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11784193	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11785071	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786825	0.89[EUR][1000 genomes]
rs11787202	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989936	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996303	0.88[ASN][1000 genomes]
rs12675273	0.86[EUR][1000 genomes]
rs12675605	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12676758	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12677524	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12677793	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12678904	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12680652	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12681898	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12682004	0.94[ASN][1000 genomes]
rs13250948	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13259268	0.81[EUR][1000 genomes]
rs13262954	0.86[EUR][1000 genomes]
rs13265309	0.86[EUR][1000 genomes]
rs13266739	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13268122	0.86[EUR][1000 genomes]
rs13270263	0.86[EUR][1000 genomes]
rs13279448	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871500	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837203	0.86[EUR][1000 genomes]
rs2880074	0.86[EUR][1000 genomes]
rs33999897	0.86[EUR][1000 genomes]
rs34008887	0.81[EUR][1000 genomes]
rs34145689	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34155810	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34155867	0.86[EUR][1000 genomes]
rs34255383	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299626	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34306176	0.86[EUR][1000 genomes]
rs34435802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493777	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34556973	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34695252	0.84[EUR][1000 genomes]
rs34873943	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34881302	0.86[EUR][1000 genomes]
rs34971735	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35140929	0.86[EUR][1000 genomes]
rs35263244	0.84[EUR][1000 genomes]
rs35349928	0.94[ASN][1000 genomes]
rs35379160	0.81[EUR][1000 genomes]
rs35394104	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35467682	0.81[EUR][1000 genomes]
rs35517423	0.83[EUR][1000 genomes]
rs35635659	0.83[EUR][1000 genomes]
rs35649342	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35767747	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35795037	0.86[EUR][1000 genomes]
rs4288345	0.86[EUR][1000 genomes]
rs4552868	0.86[EUR][1000 genomes]
rs4593510	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67089516	0.81[EUR][1000 genomes]
rs67555988	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6984152	0.83[EUR][1000 genomes]
rs6990243	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994764	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6995010	0.83[EUR][1000 genomes]
rs7004507	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7009594	0.86[EUR][1000 genomes]
rs71520889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520891	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520892	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520893	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520897	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520900	0.86[EUR][1000 genomes]
rs71520901	0.86[EUR][1000 genomes]
rs731126	0.81[EUR][1000 genomes]
rs7821181	0.86[EUR][1000 genomes]
rs7824500	0.81[EUR][1000 genomes]
rs7834086	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7842204	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845137	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105489400-105512800	Weak transcription	Gastric	stomach
2	chr8:105491400-105510000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:105491400-105517200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:105492200-105505800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:105495400-105507200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:105495600-105509200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:105495600-105525800	Weak transcription	Psoas Muscle	Psoas
8	chr8:105499200-105542200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:105500800-105519800	Strong transcription	Dnd41	blood
10	chr8:105501000-105509200	Weak transcription	Lung	lung
11	chr8:105501200-105509000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:105501400-105505800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:105501400-105509200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:105501400-105509400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:105501400-105509600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:105501400-105515000	Weak transcription	Spleen	Spleen
17	chr8:105501400-105516200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:105501400-105517400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:105501400-105517400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:105501600-105509200	Weak transcription	Brain Substantia Nigra	brain
21	chr8:105501600-105509200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:105501600-105509400	Weak transcription	HMEC	breast
23	chr8:105501600-105512200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:105501600-105520800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:105501800-105505600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr8:105501800-105509200	Weak transcription	NHLF	lung
27	chr8:105501800-105518800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:105501800-105521000	Weak transcription	NHEK	skin
29	chr8:105502000-105510800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:105502000-105518400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:105502200-105509400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:105503200-105511200	Weak transcription	Esophagus	oesophagus
33	chr8:105503400-105505800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:105503400-105505800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:105503400-105509400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr8:105503400-105509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:105503600-105505600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:105503600-105505600	Weak transcription	Thymus	Thymus
39	chr8:105503600-105505800	Weak transcription	Brain Germinal Matrix	brain
40	chr8:105503600-105506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:105503600-105509000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:105503600-105509000	Weak transcription	HSMM	muscle
43	chr8:105503600-105509200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:105503600-105509200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:105503600-105509200	Weak transcription	Primary T cells from cord blood	blood
46	chr8:105503600-105509200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:105503600-105509200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:105503600-105509200	Weak transcription	Adipose Nuclei	Adipose
49	chr8:105503600-105509200	Weak transcription	Fetal Brain Male	brain
50	chr8:105503600-105509200	Weak transcription	Fetal Intestine Large	intestine

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