Variant report

Variant	rs35649342
Chromosome Location	chr8:105588534-105588535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105587608..105589528-chr8:105597267..105600152,2	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10505062	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808392	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955352	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10955357	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11775166	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11775331	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776230	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11777528	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779233	0.82[ASN][1000 genomes]
rs11781863	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11782169	0.83[EUR][1000 genomes]
rs11782889	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783063	0.86[EUR][1000 genomes]
rs11783104	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11783651	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784193	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785071	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11787202	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989936	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11996303	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675273	0.86[EUR][1000 genomes]
rs12675605	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676758	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677524	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677793	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678904	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678962	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12680652	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682004	0.82[ASN][1000 genomes]
rs13250948	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254678	0.88[AMR][1000 genomes]
rs13259268	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13262954	0.86[EUR][1000 genomes]
rs13265309	0.86[EUR][1000 genomes]
rs13266321	0.83[AFR][1000 genomes]
rs13266739	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13268122	0.86[EUR][1000 genomes]
rs13268597	0.88[AFR][1000 genomes]
rs13270263	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279448	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1438355	0.92[AMR][1000 genomes]
rs16871500	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1837203	0.86[EUR][1000 genomes]
rs2880074	0.86[EUR][1000 genomes]
rs3018438	0.82[AFR][1000 genomes]
rs33999897	0.86[EUR][1000 genomes]
rs34008887	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34145689	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155810	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155867	0.86[EUR][1000 genomes]
rs34255383	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34299626	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34306176	0.86[EUR][1000 genomes]
rs34435802	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34493777	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34556973	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34695252	0.84[EUR][1000 genomes]
rs34873943	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34881302	0.86[EUR][1000 genomes]
rs34971735	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013911	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35140929	0.86[EUR][1000 genomes]
rs35263244	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35328383	0.88[AFR][1000 genomes]
rs35349928	0.82[ASN][1000 genomes]
rs35379160	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35394104	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35465370	0.82[AFR][1000 genomes]
rs35467682	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35517423	0.83[EUR][1000 genomes]
rs35635659	0.83[EUR][1000 genomes]
rs35767747	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35795037	0.86[EUR][1000 genomes]
rs4236775	0.83[AFR][1000 genomes]
rs4263729	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4288345	0.86[EUR][1000 genomes]
rs4338071	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4552868	0.86[EUR][1000 genomes]
rs4593510	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734803	0.84[AFR][1000 genomes]
rs59294667	0.86[AFR][1000 genomes]
rs6468939	0.86[AFR][1000 genomes]
rs66494641	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67089516	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67555988	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67712332	0.85[AFR][1000 genomes]
rs6984152	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6990243	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993149	0.84[AFR][1000 genomes]
rs6994764	0.86[EUR][1000 genomes]
rs6995010	0.83[EUR][1000 genomes]
rs7004507	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009594	0.86[EUR][1000 genomes]
rs7010576	0.82[AFR][1000 genomes]
rs71520889	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520891	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520892	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520893	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520897	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520900	0.86[EUR][1000 genomes]
rs71520901	0.86[EUR][1000 genomes]
rs731126	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7465442	0.83[AFR][1000 genomes]
rs7815871	0.84[AFR][1000 genomes]
rs7821181	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823671	0.91[AFR][1000 genomes]
rs7824500	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7834086	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842204	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845137	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9694676	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv508522	chr8:105532034-105614403	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105581600-105590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:105581600-105593000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:105581600-105598600	Weak transcription	Osteobl	bone
4	chr8:105584200-105600000	Weak transcription	Aorta	Aorta
5	chr8:105584600-105598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:105587000-105589200	Enhancers	K562	blood
7	chr8:105587200-105588800	Enhancers	Fetal Thymus	thymus
8	chr8:105587200-105588800	Enhancers	Left Ventricle	heart
9	chr8:105587200-105589000	Enhancers	Thymus	Thymus
10	chr8:105587600-105588600	Weak transcription	Psoas Muscle	Psoas
11	chr8:105587600-105589600	Enhancers	Dnd41	blood
12	chr8:105587800-105588800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:105588000-105588800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:105588400-105589000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:105588400-105590600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:105588400-105598000	Weak transcription	Fetal Heart	heart

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