Variant report

Variant	rs7815871
Chromosome Location	chr8:105646820-105646821
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105632918..105635015-chr8:105646007..105648866,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10505062	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10955352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10955357	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11775166	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11776230	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11777528	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11782865	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782889	0.84[AFR][1000 genomes]
rs11783104	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11783651	0.81[CEU][hapmap]
rs11784193	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11989936	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11995774	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996303	0.83[AFR][1000 genomes]
rs12677524	1.00[JPT][hapmap]
rs12678904	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs12678962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12680250	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681898	0.83[AFR][1000 genomes]
rs13249169	1.00[JPT][hapmap]
rs13250948	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs13264598	1.00[JPT][hapmap]
rs13265309	0.83[CEU][hapmap]
rs13266321	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13266739	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs13268122	1.00[JPT][hapmap]
rs13268597	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13279448	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs16871500	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.92[YRI][hapmap]
rs16871634	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028244	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28481880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3018438	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs34008887	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35263244	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35328383	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35379160	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35465370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35467682	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35649342	0.84[AFR][1000 genomes]
rs4236775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263729	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4338071	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4593510	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs4734803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59294667	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6468939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66494641	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs67089516	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs67712332	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6990243	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs6993149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994764	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7004507	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs7010576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821181	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7823671	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7824500	0.87[AFR][1000 genomes]
rs7834086	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs7841202	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842204	0.81[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7845137	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9694676	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7815871	LRP12	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105645400-105647600	Enhancers	Thymus	Thymus
2	chr8:105645400-105648200	Enhancers	Fetal Thymus	thymus
3	chr8:105645800-105647400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:105646200-105647200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:105646200-105647200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:105646400-105647200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:105646600-105647000	Enhancers	Dnd41	blood
8	chr8:105646800-105650800	Weak transcription	K562	blood

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