Variant report

Variant	rs13249169
Chromosome Location	chr8:105472400-105472401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10505062	1.00[JPT][hapmap]
rs10955352	1.00[JPT][hapmap]
rs11777528	1.00[JPT][hapmap]
rs11779233	0.82[ASN][1000 genomes]
rs11784193	1.00[JPT][hapmap]
rs11989936	1.00[JPT][hapmap]
rs12677524	1.00[JPT][hapmap]
rs12678904	1.00[JPT][hapmap]
rs12678962	1.00[JPT][hapmap]
rs12682004	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13250948	1.00[JPT][hapmap]
rs13264598	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266739	1.00[JPT][hapmap]
rs13268122	1.00[JPT][hapmap]
rs13279448	1.00[JPT][hapmap]
rs16871500	1.00[JPT][hapmap]
rs2959025	0.82[YRI][hapmap]
rs3018438	1.00[JPT][hapmap]
rs35349928	0.82[ASN][1000 genomes]
rs35787438	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263729	1.00[JPT][hapmap]
rs4593510	1.00[JPT][hapmap]
rs4734803	1.00[JPT][hapmap]
rs6468939	1.00[JPT][hapmap]
rs6990243	1.00[JPT][hapmap]
rs6993149	1.00[JPT][hapmap]
rs6994764	1.00[JPT][hapmap]
rs7004507	1.00[JPT][hapmap]
rs71520888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821181	1.00[JPT][hapmap]
rs7823671	1.00[JPT][hapmap]
rs7834086	1.00[JPT][hapmap]
rs7842204	1.00[JPT][hapmap]
rs7845137	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105466200-105476200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:105469600-105478600	Weak transcription	Pancreas	Pancrea
3	chr8:105470000-105474600	Enhancers	Fetal Intestine Large	intestine
4	chr8:105470800-105474600	Enhancers	Liver	Liver
5	chr8:105471600-105474000	Enhancers	Fetal Intestine Small	intestine
6	chr8:105472200-105473400	Enhancers	HepG2	liver
7	chr8:105472400-105472600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:105472400-105472800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:105472400-105473000	Enhancers	Duodenum Mucosa	Duodenum

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