Variant report

Variant	rs7845137
Chromosome Location	chr8:105518533-105518534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105513176..105515465-chr8:105516605..105518606,2	K562	blood:
2	chr8:105518486..105520827-chr8:105523063..105525599,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10505060	0.82[YRI][hapmap]
rs10505062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10808392	0.88[ASN][1000 genomes]
rs10955352	0.83[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs11775166	0.80[EUR][1000 genomes]
rs11775331	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11776230	0.83[EUR][1000 genomes]
rs11777528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779233	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781863	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782457	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11782889	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783063	0.82[EUR][1000 genomes]
rs11783104	0.83[EUR][1000 genomes]
rs11783651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11784193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11785071	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786825	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs11787202	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996303	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12675273	0.82[EUR][1000 genomes]
rs12675605	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12676758	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12677524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12677793	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12678904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12678962	0.83[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs12680652	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12681898	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12682004	0.94[ASN][1000 genomes]
rs13249169	1.00[JPT][hapmap]
rs13250948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13259268	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13262954	0.82[EUR][1000 genomes]
rs13264598	1.00[JPT][hapmap]
rs13265309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs13266739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs13268122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs13268597	0.81[AFR][1000 genomes]
rs13270263	0.82[EUR][1000 genomes]
rs13279448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871526	0.82[YRI][hapmap]
rs1837203	0.82[EUR][1000 genomes]
rs2880074	0.82[EUR][1000 genomes]
rs3018438	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs33999897	0.82[EUR][1000 genomes]
rs34008887	0.80[EUR][1000 genomes]
rs34145689	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34155810	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34155867	0.82[EUR][1000 genomes]
rs34255383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299626	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34306176	0.82[EUR][1000 genomes]
rs34435802	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493777	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34556973	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34873943	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34881302	0.82[EUR][1000 genomes]
rs34971735	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35013911	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140929	0.82[EUR][1000 genomes]
rs35263244	0.83[EUR][1000 genomes]
rs35328383	0.81[AFR][1000 genomes]
rs35349928	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35379160	0.80[EUR][1000 genomes]
rs35394104	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35467682	0.80[EUR][1000 genomes]
rs35649342	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35767747	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35795037	0.82[EUR][1000 genomes]
rs4263729	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4288345	0.82[EUR][1000 genomes]
rs4338071	0.85[AFR][1000 genomes]
rs4552868	0.82[EUR][1000 genomes]
rs4593510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4623378	0.82[YRI][hapmap]
rs4734803	0.83[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6468939	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs67089516	0.80[EUR][1000 genomes]
rs67555988	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67712332	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6984152	0.88[EUR][1000 genomes]
rs6990243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993149	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6994764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7004507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7009594	0.82[EUR][1000 genomes]
rs71520889	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520891	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520893	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520897	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520900	0.82[EUR][1000 genomes]
rs71520901	0.82[EUR][1000 genomes]
rs731126	0.80[EUR][1000 genomes]
rs7813587	0.82[YRI][hapmap]
rs7815209	0.82[YRI][hapmap]
rs7819498	0.80[YRI][hapmap]
rs7821181	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7823671	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs7824500	0.80[EUR][1000 genomes]
rs7834086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7838928	0.82[YRI][hapmap]
rs7842204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694676	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105495600-105525800	Weak transcription	Psoas Muscle	Psoas
2	chr8:105499200-105542200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:105500800-105519800	Strong transcription	Dnd41	blood
4	chr8:105501600-105520800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:105501800-105518800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:105501800-105521000	Weak transcription	NHEK	skin
7	chr8:105503600-105519000	Weak transcription	Fetal Intestine Small	intestine
8	chr8:105503600-105520800	Weak transcription	Pancreas	Pancrea
9	chr8:105503600-105525800	Weak transcription	HUVEC	blood vessel
10	chr8:105503800-105525000	Weak transcription	Fetal Stomach	stomach
11	chr8:105503800-105535800	Weak transcription	NHDF-Ad	bronchial
12	chr8:105505400-105521800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:105506000-105520800	Weak transcription	Brain Angular Gyrus	brain
14	chr8:105506400-105520000	Weak transcription	Right Ventricle	heart
15	chr8:105509600-105535800	Weak transcription	Aorta	Aorta
16	chr8:105510200-105519800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:105510200-105520400	Weak transcription	Lung	lung
18	chr8:105510200-105521200	Weak transcription	Brain Substantia Nigra	brain
19	chr8:105510200-105524600	Weak transcription	NHLF	lung
20	chr8:105510200-105525400	Weak transcription	Primary T cells from cord blood	blood
21	chr8:105510200-105546200	Weak transcription	HMEC	breast
22	chr8:105510400-105521600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr8:105510400-105539400	Weak transcription	HSMMtube	muscle
24	chr8:105510800-105531000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:105511000-105522200	Weak transcription	Fetal Kidney	kidney
26	chr8:105511000-105525800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:105511000-105527200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:105511000-105529800	Weak transcription	Fetal Lung	lung
29	chr8:105511200-105519400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:105511200-105525200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr8:105511400-105518600	Weak transcription	Brain Anterior Caudate	brain
32	chr8:105511400-105518800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr8:105511600-105518600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:105511600-105518800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:105511600-105519400	Weak transcription	Brain Germinal Matrix	brain
36	chr8:105511600-105520000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:105511600-105525600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:105511600-105525600	Weak transcription	GM12878-XiMat	blood
39	chr8:105511800-105518800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr8:105511800-105519600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:105511800-105520200	Weak transcription	NH-A	brain
42	chr8:105511800-105520400	Weak transcription	Fetal Intestine Large	intestine
43	chr8:105511800-105524600	Weak transcription	Osteobl	bone
44	chr8:105511800-105527000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr8:105511800-105532600	Weak transcription	HSMM	muscle
46	chr8:105511800-105550200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:105512000-105518600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:105512200-105518600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr8:105512800-105542000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr8:105512800-105550200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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