Variant report

Variant	rs1837203
Chromosome Location	chr8:105619750-105619751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10505062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10955352	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10955357	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775166	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775331	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11776230	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11781863	0.84[EUR][1000 genomes]
rs11782169	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782366	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782889	0.81[EUR][1000 genomes]
rs11783063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783104	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11784193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11785071	0.84[EUR][1000 genomes]
rs11786825	0.90[CEU][hapmap]
rs11787202	0.84[EUR][1000 genomes]
rs11989936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12675273	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675605	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12676758	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12677524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12677793	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12678904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12678962	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs12680652	0.86[EUR][1000 genomes]
rs12681898	0.86[EUR][1000 genomes]
rs13249169	1.00[JPT][hapmap]
rs13250005	0.82[EUR][1000 genomes]
rs13250948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13254058	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254678	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257283	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13260018	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264598	1.00[JPT][hapmap]
rs13265309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265320	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13268122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270263	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1438355	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2880074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3018438	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs33999897	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34008887	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34145689	0.86[EUR][1000 genomes]
rs34155810	0.86[EUR][1000 genomes]
rs34155867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34255383	0.82[EUR][1000 genomes]
rs34299626	0.84[EUR][1000 genomes]
rs34306176	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340810	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34435802	0.84[EUR][1000 genomes]
rs34493777	0.86[EUR][1000 genomes]
rs34556973	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34690452	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34695252	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34873943	0.86[EUR][1000 genomes]
rs34881302	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971735	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35013911	0.86[EUR][1000 genomes]
rs35085883	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258168	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35263244	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379160	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35394104	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35467682	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517423	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35635659	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35649342	0.86[EUR][1000 genomes]
rs35767747	0.86[EUR][1000 genomes]
rs35795037	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263729	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4288345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4734803	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs6468939	1.00[JPT][hapmap]
rs66494641	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089516	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67555988	0.88[EUR][1000 genomes]
rs6984152	0.83[EUR][1000 genomes]
rs6990243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6993149	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs6994764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6995010	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7009594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520889	0.84[EUR][1000 genomes]
rs71520891	0.86[EUR][1000 genomes]
rs71520892	0.82[EUR][1000 genomes]
rs71520893	0.86[EUR][1000 genomes]
rs71520897	0.86[EUR][1000 genomes]
rs71520900	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731126	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821181	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823671	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7824500	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7842204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7845137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105619600-105619800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:105619600-105619800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:105619600-105620000	ZNF genes & repeats	Dnd41	blood

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